Comments for The Hyphal Tip http://fungalgenomes.org/blog Digesting the fungal genomes Tue, 23 Feb 2010 18:31:48 +0000 hourly 1 http://wordpress.org/?v=abc Comment on Preparing for meeting on Fungal Genome databases by Dave Messina http://fungalgenomes.org/blog/2010/02/fungal-genome-databases/comment-page-1/#comment-8240 Dave Messina Tue, 23 Feb 2010 18:31:48 +0000 http://fungalgenomes.org/blog/?p=1537#comment-8240 Thanks, Jason! Thanks, Jason!

]]> Comment on Preparing for meeting on Fungal Genome databases by Bridget Barker http://fungalgenomes.org/blog/2010/02/fungal-genome-databases/comment-page-1/#comment-8103 Bridget Barker Mon, 22 Feb 2010 17:25:12 +0000 http://fungalgenomes.org/blog/?p=1537#comment-8103 Great news Jason! I look forward to hearing the outcome of the meeting. Would be great to organize an afternoon session during Asilomar to get folks on board as well. Great news Jason! I look forward to hearing the outcome of the meeting. Would be great to organize an afternoon session during Asilomar to get folks on board as well.

]]> Comment on Preparing for meeting on Fungal Genome databases by Jason Stajich http://fungalgenomes.org/blog/2010/02/fungal-genome-databases/comment-page-1/#comment-7994 Jason Stajich Sun, 21 Feb 2010 21:44:04 +0000 http://fungalgenomes.org/blog/?p=1537#comment-7994 I'm hoping for it, and will do my best to communicate that sentiment Dave. Some of the challenges may be further upstream in unified annotation tools for the genomes that every lab can be producing as well. I’m hoping for it, and will do my best to communicate that sentiment Dave. Some of the challenges may be further upstream in unified annotation tools for the genomes that every lab can be producing as well.

]]> Comment on Preparing for meeting on Fungal Genome databases by Dave Messina http://fungalgenomes.org/blog/2010/02/fungal-genome-databases/comment-page-1/#comment-7961 Dave Messina Sun, 21 Feb 2010 15:59:11 +0000 http://fungalgenomes.org/blog/?p=1537#comment-7961 Sounds great -- really good to hear there will be the (much-needed) discussions on tools and resources. In particular regarding standardized formats. I'm sure you know about the GO <a href="http://www.geneontology.org/GO.refgenome.shtml" rel="nofollow">Reference Genome Annotation Project</a>, which has as part of it a push for the primary datasets (genomic and gene/protein seqs) to be released in standard formats so that it's easier for downstream consumers to compare and analyze them. Sounds like the fungal community is thinking along the same lines (and even more broadly). Looking forward to hearing what comes out of this meeting. It would be great to see this sort of thing become common practice. Sounds great — really good to hear there will be the (much-needed) discussions on tools and resources.

In particular regarding standardized formats. I’m sure you know about the GO Reference Genome Annotation Project, which has as part of it a push for the primary datasets (genomic and gene/protein seqs) to be released in standard formats so that it’s easier for downstream consumers to compare and analyze them.

Sounds like the fungal community is thinking along the same lines (and even more broadly). Looking forward to hearing what comes out of this meeting. It would be great to see this sort of thing become common practice.

]]> Comment on In bookstores now by Pedro Beltrao http://fungalgenomes.org/blog/2010/02/in-bookstores-now/comment-page-1/#comment-7472 Pedro Beltrao Fri, 12 Feb 2010 18:10:08 +0000 http://fungalgenomes.org/blog/?p=1496#comment-7472 It looks very interesting but it is also very expensive. It looks very interesting but it is also very expensive.

]]> Comment on Trichoderma reesei genome paper published by Jason Stajich http://fungalgenomes.org/blog/2008/05/trichoderma-reesei-genome-paper-published/comment-page-1/#comment-7467 Jason Stajich Tue, 09 Feb 2010 19:23:34 +0000 http://fungalgenomes.org/blog/?p=325#comment-7467 Try GenBank and JGI websites. Links to fully sequenced fungal genomes in our <a href="http://fungalgenomes.org/wiki/Fungal_Genome_Links" rel="nofollow">wiki</a> which is also linked at the top of the pages on this site under "available genomes" Try GenBank and JGI websites. Links to fully sequenced fungal genomes in our wiki which is also linked at the top of the pages on this site under “available genomes”

]]> Comment on Trichoderma reesei genome paper published by venkatesh iyer http://fungalgenomes.org/blog/2008/05/trichoderma-reesei-genome-paper-published/comment-page-1/#comment-7465 venkatesh iyer Tue, 09 Feb 2010 06:06:36 +0000 http://fungalgenomes.org/blog/?p=325#comment-7465 hello sir, greetings we people happt to hear few industrially important fungal strains are completely sequenced. can research people get the complete genome sequence of the Aspergillus niger, Trichoderma reesei, and Phanerochaete chrysogenum hello sir,
greetings
we people happt to hear few industrially important fungal strains are completely sequenced. can research people get the complete genome sequence of the Aspergillus niger, Trichoderma reesei, and Phanerochaete chrysogenum

]]> Comment on Origins and evolution of pathogens by Tweets that mention Origins and evolution of pathogens « The Hyphal Tip -- Topsy.com http://fungalgenomes.org/blog/2010/02/pathogen-evolution/comment-page-1/#comment-7464 Tweets that mention Origins and evolution of pathogens « The Hyphal Tip -- Topsy.com Mon, 08 Feb 2010 14:16:31 +0000 http://fungalgenomes.org/blog/?p=1475#comment-7464 [...] This post was mentioned on Twitter by ResearchBlogging.org, Lurino Bertorani. Lurino Bertorani said: RT @researchblogs: Origins and evolution of pathogens http://goo.gl/fb/Zml6 [...] [...] This post was mentioned on Twitter by ResearchBlogging.org, Lurino Bertorani. Lurino Bertorani said: RT @researchblogs: Origins and evolution of pathogens http://goo.gl/fb/Zml6 [...]

]]> Comment on Underwater mushrooms? by Tweets that mention Underwater mushrooms? « The Hyphal Tip -- Topsy.com http://fungalgenomes.org/blog/2010/01/underwater-mushrooms/comment-page-1/#comment-7141 Tweets that mention Underwater mushrooms? « The Hyphal Tip -- Topsy.com Tue, 26 Jan 2010 02:04:34 +0000 http://fungalgenomes.org/blog/?p=1482#comment-7141 [...] This post was mentioned on Twitter by Lars Fischer, ResearchBlogging.org, fungalgenomes, Dave Riddell, Philip McIntosh and others. Philip McIntosh said: RT: @fungalgenomes: The Hyphal Tip: Underwater mushrooms? http://bit.ly/5wATjH [...] [...] This post was mentioned on Twitter by Lars Fischer, ResearchBlogging.org, fungalgenomes, Dave Riddell, Philip McIntosh and others. Philip McIntosh said: RT: @fungalgenomes: The Hyphal Tip: Underwater mushrooms? http://bit.ly/5wATjH [...]

]]> Comment on Underwater mushrooms? by uberVU - social comments http://fungalgenomes.org/blog/2010/01/underwater-mushrooms/comment-page-1/#comment-7140 uberVU - social comments Mon, 25 Jan 2010 23:43:52 +0000 http://fungalgenomes.org/blog/?p=1482#comment-7140 <strong>Social comments and analytics for this post...</strong> This post was mentioned on Twitter by fungalgenomes: The Hyphal Tip: Underwater mushrooms? http://bit.ly/5wATjH... Social comments and analytics for this post…

This post was mentioned on Twitter by fungalgenomes: The Hyphal Tip: Underwater mushrooms? http://bit.ly/5wATjH...

]]> Comment on Underwater mushrooms? by Philip McIntosh http://fungalgenomes.org/blog/2010/01/underwater-mushrooms/comment-page-1/#comment-7138 Philip McIntosh Mon, 25 Jan 2010 19:13:21 +0000 http://fungalgenomes.org/blog/?p=1482#comment-7138 That is super interesting. Too bad the paper isn't open access to learn more. I am wondering if any attempt was made to isolate a culture and initiate mushroom formation in the air to determine if it is obligately aquatic for reproduction? I would tend to doubt it, and think it is more of a fluke event by one particular colony. But... my mind is open on that. Thanks for tweeting it. That is super interesting. Too bad the paper isn’t open access to learn more. I am wondering if any attempt was made to isolate a culture and initiate mushroom formation in the air to determine if it is obligately aquatic for reproduction? I would tend to doubt it, and think it is more of a fluke event by one particular colony. But… my mind is open on that. Thanks for tweeting it.

]]> Comment on Happy holidays microbial art by Labgrab http://fungalgenomes.org/blog/2009/12/happy-holidays-art/comment-page-1/#comment-7126 Labgrab Mon, 04 Jan 2010 23:59:17 +0000 http://fungalgenomes.org/blog/?p=1392#comment-7126 Terrific petri skills right there. Surgical loop control! Terrific petri skills right there. Surgical loop control!

]]> Comment on Happy holidays microbial art by uberVU - social comments http://fungalgenomes.org/blog/2009/12/happy-holidays-art/comment-page-1/#comment-7118 uberVU - social comments Thu, 31 Dec 2009 01:24:41 +0000 http://fungalgenomes.org/blog/?p=1392#comment-7118 <strong>Social comments and analytics for this post...</strong> This post was mentioned on Twitter by fungalgenomes: The Hyphal Tip: Happy holidays microbial art http://fungalgenomes.org/blog/2009/12/happy-holidays-art/... Social comments and analytics for this post…

This post was mentioned on Twitter by fungalgenomes: The Hyphal Tip: Happy holidays microbial art http://fungalgenomes.org/blog/2009/12/happy-holidays-art/...

]]> Comment on Happy holidays microbial art by Tweets that mention Happy holidays microbial art « The Hyphal Tip -- Topsy.com http://fungalgenomes.org/blog/2009/12/happy-holidays-art/comment-page-1/#comment-7116 Tweets that mention Happy holidays microbial art « The Hyphal Tip -- Topsy.com Wed, 30 Dec 2009 22:10:12 +0000 http://fungalgenomes.org/blog/?p=1392#comment-7116 [...] This post was mentioned on Twitter by fungalgenomes, yoder. yoder said: RT @fungalgenomes: The Hyphal Tip: Happy holidays microbial art http://fungalgenomes.org/blog/2009/12/happy-holidays-art/ [...] [...] This post was mentioned on Twitter by fungalgenomes, yoder. yoder said: RT @fungalgenomes: The Hyphal Tip: Happy holidays microbial art http://fungalgenomes.org/blog/2009/12/happy-holidays-art/ [...]

]]> Comment on The S. Bartnicki-Garcia travel award by Brian Shaw http://fungalgenomes.org/blog/2009/12/the-s-bartnicki-garcia-travel-award/comment-page-1/#comment-7084 Brian Shaw Mon, 14 Dec 2009 15:45:08 +0000 http://fungalgenomes.org/blog/?p=1361#comment-7084 Thanks for this Jason. SBG has been a mentor to so many of us. This award will be a testament to his years of leadership. Thanks for this Jason. SBG has been a mentor to so many of us. This award will be a testament to his years of leadership.

]]> Comment on The S. Bartnicki-Garcia travel award by Jason Stajich http://fungalgenomes.org/blog/2009/12/the-s-bartnicki-garcia-travel-award/comment-page-1/#comment-7074 Jason Stajich Thu, 10 Dec 2009 01:03:34 +0000 http://fungalgenomes.org/blog/?p=1361#comment-7074 Update - this may be a MSA travel or research award pending enough raised support and Dr Bartnicki-Garcia's designation. Update – this may be a MSA travel or research award pending enough raised support and Dr Bartnicki-Garcia’s designation.

]]> Comment on Aspergillus has a posse by Colin Purrington http://fungalgenomes.org/blog/2009/03/aspergillus-has-a-posse/comment-page-1/#comment-7042 Colin Purrington Tue, 01 Dec 2009 20:04:05 +0000 http://fungalgenomes.org/blog/?p=1023#comment-7042 Yea!! Yea!!

]]> Comment on Bat White-nose syndrome brevia by Corinna http://fungalgenomes.org/blog/2008/10/bat-white-nose-syndrome-brevia/comment-page-1/#comment-7003 Corinna Sat, 14 Nov 2009 17:34:56 +0000 http://fungalgenomes.org/blog/?p=802#comment-7003 I'm also doing research for a term paper, and I'm looking for information on any laws and policies that are currently in place regarding the spreading/halting of white nose syndrome? Any info or links would be greatly appreciated. I’m also doing research for a term paper, and I’m looking for information on any laws and policies that are currently in place regarding the spreading/halting of white nose syndrome? Any info or links would be greatly appreciated.

]]> Comment on Bat White-nose syndrome brevia by Shannon http://fungalgenomes.org/blog/2008/10/bat-white-nose-syndrome-brevia/comment-page-1/#comment-6979 Shannon Tue, 27 Oct 2009 08:44:14 +0000 http://fungalgenomes.org/blog/?p=802#comment-6979 What is the life cycle of the WNS? I am taking a Micro course and chose this as my subject for my report. I have a lot of great information. Unfortunately I cannot find this anywhere. Can anyone help? What is the life cycle of the WNS? I am taking a Micro course and chose this as my subject for my report. I have a lot of great information. Unfortunately I cannot find this anywhere. Can anyone help?

]]> Comment on A primer on the Fungi by Todd Haris http://fungalgenomes.org/blog/2009/09/a-primer-on-the-fungi/comment-page-1/#comment-6899 Todd Haris Sun, 04 Oct 2009 02:43:18 +0000 http://fungalgenomes.org/blog/?p=1249#comment-6899 That's a great (and dense!) overview. Very useful for those just starting to look at fungal genomes. That’s a great (and dense!) overview. Very useful for those just starting to look at fungal genomes.

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